The work is devoted synthesis, investigation and application of composites based on calcium carbonate microspheres, with embedded nanoparticles of magnetite (Fe3O4), coated by silver nanostructured shell. This composite (SERS-substrate) was used for surface-enhanced Raman spectra (SERS) registration of rhodamine 6G and different pharmaceuticals such as ipratropium bromide, chloramphenicol, propranolol, pindolol, tamoxifen, diltiazem.